doxygen-example/mpp__read__compressed_8h_source.html

 !***********************************************************************
 !*                   GNU Lesser General Public License
 !*
 !* This file is part of the GFDL Flexible Modeling System (FMS).
 !*
 !* FMS is free software: you can redistribute it and/or modify it under
 !* the terms of the GNU Lesser General Public License as published by
 !* the Free Software Foundation, either version 3 of the License, or (at
 !* your option) any later version.
 !*
 !* FMS is distributed in the hope that it will be useful, but WITHOUT
 !* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
 !* FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
 !* for more details.
 !*
 !* You should have received a copy of the GNU Lesser General Public
 !* License along with FMS.  If not, see <http://www.gnu.org/licenses/>.
 !***********************************************************************
     subroutine MPP_READ_COMPRESSED_1D_(unit, field, domain, data, tindex)
       integer, intent(in) :: unit
       type(fieldtype), intent(in) :: field
       type(domain2D),  intent(in) :: domain
       MPP_TYPE_, intent(inout) :: data(:)
       integer,           intent(in), optional :: tindex

       MPP_TYPE_ :: data2D(size(data,1),1)
       pointer( ptr, data2D )
       ptr = LOC(data)

       call mpp_read(unit, field, domain, data2D, tindex)
       return
     end subroutine MPP_READ_COMPRESSED_1D_

     subroutine MPP_READ_COMPRESSED_2D_(unit, field, domain, data, tindex, start, nread, threading)
       integer,           intent(in)           :: unit
       type(fieldtype),   intent(in)           :: field
       type(domain2D),    intent(in)           :: domain
       MPP_TYPE_,         intent(inout)        :: data(:,:)
       integer,           intent(in), optional :: tindex
       integer,           intent(in), optional :: start(:), nread(:)
       integer,           intent(in), optional :: threading

       integer, allocatable :: pelist(:)
       integer :: npes, p, threading_flag
       type(domain2d), pointer :: io_domain=>NULL()
       logical :: compute_chksum,print_compressed_chksum
       integer(LONG_KIND) ::chk

       call mpp_clock_begin(mpp_read_clock)

       if( .NOT.module_is_initialized )call mpp_error( FATAL, 'MPP_READ_COMPRESSED_2D_: must first call mpp_io_init.' )
       if( .NOT.mpp_file(unit)%valid )call mpp_error( FATAL, 'MPP_READ_COMPRESSED_2D_: invalid unit number.' )

       print_compressed_chksum = .FALSE.

     if(size(data) > 0) then
       data = 0 !! zero out data so other tiles do not contribute junk to chksum
       threading_flag = MPP_SINGLE
       if( PRESENT(threading) )threading_flag = threading
       if( threading_flag == MPP_MULTI ) then
      call read_record(unit,field,size(data(:,:)),data,tindex,start_in=start, axsiz_in=nread)
       else if( threading_flag == MPP_SINGLE ) then

      io_domain=>mpp_get_io_domain(domain)
      if(.not. ASSOCIATED(io_domain)) call mpp_error( FATAL, 'MPP_READ_COMPRESSED_2D_: io_domain must be defined.' )
      npes = mpp_get_domain_npes(io_domain)
      allocate(pelist(npes))
      call mpp_get_pelist(io_domain,pelist)

      if(mpp_pe() == pelist(1)) call read_record(unit,field,size(data(:,:)),data,tindex,start_in=start, axsiz_in=nread)

      !--- z1l replace mpp_broadcast with mpp_send/mpp_recv to avoid hang in calling MPI_COMM_CREATE
      !---     because size(pelist) might be different for different rank.
      !--- prepost receive
      if( mpp_pe() == pelist(1) ) then
         do p = 2, npes
            call mpp_send(data(1,1), plen=size(data(:,:)), to_pe=pelist(p), tag=COMM_TAG_1)
         enddo
         call mpp_sync_self()
      else
         call mpp_recv(data(1,1), glen=size(data(:,:)), from_pe=pelist(1), block=.false., tag=COMM_TAG_1)
         call mpp_sync_self(check=EVENT_RECV)
      endif

      deallocate(pelist)
       else
      call mpp_error( FATAL, 'MPP_READ_COMPRESSED_2D_: threading should be MPP_SINGLE or MPP_MULTI')
       endif
     endif

       compute_chksum = .FALSE.
       if (ANY(field%checksum /= default_field%checksum) ) compute_chksum = .TRUE.

       if (compute_chksum) then
 #ifdef use_netCDF
      if (field%type==NF_INT) then
             if (field%fill == MPP_FILL_DOUBLE .or. field%fill == real(MPP_FILL_INT) ) then
                chk = mpp_chksum( ceiling(data), mask_val=MPP_FILL_INT )
             else
            call mpp_error(NOTE,"During mpp_io(mpp_read_compressed_2d) int field "//trim(field%name)// &
                   " found fill. Icebergs, or code using defaults can safely ignore. "// &
                   " If manually overriding compressed restart fills, confirm this is what you want.")
            chk = mpp_chksum( ceiling(data), mask_val=field%fill)
         end if
      else !!real data
         chk = mpp_chksum(data,mask_val=field%fill)
      end if
 #endif
      !!compare
          if ( print_compressed_chksum) then
             if ( mpp_pe() == mpp_root_pe() ) then
                print '(A,Z16)', "mpp_read_compressed_2d chksum: "//trim(field%name)//" = ", chk
                !! discuss making fatal after testing/review to match other routines.
                !! Need to do some nword-counting and digging with pjp
                !! this should be if ( chk /= field%checksum ) as it was tested @ulm_201505..
                if ( MOD(chk, field%checksum(1)) /= 0 ) then
                   print '(A,Z16)', "File stored checksum: "//trim(field%name)//" = ", field%checksum(1)
                   call mpp_error(NOTE,"mpp_read_compressed_2d chksum: "//trim(field%name)//" failed!")
                end if
             endif
          end if
       end if

       call mpp_clock_end(mpp_read_clock)
       return
     end subroutine MPP_READ_COMPRESSED_2D_

     subroutine MPP_READ_COMPRESSED_3D_(unit, field, domain, data, tindex, start, nread, threading)
       integer,       intent(in)       :: unit
       type(fieldtype),   intent(in)       :: field
       type(domain2D),    intent(in)       :: domain
       MPP_TYPE_,     intent(inout)        :: data(:,:,:)
       integer,       intent(in), optional :: tindex
       integer,       intent(in), optional :: start(:), nread(:)
       integer,       intent(in), optional :: threading

       integer, allocatable :: pelist(:)
       integer :: npes, p, threading_flag
       type(domain2d), pointer :: io_domain=>NULL()
       logical :: compute_chksum,print_compressed_chksum
       integer(LONG_KIND) ::chk

       call mpp_clock_begin(mpp_read_clock)

       data = 0 !! zero out data so other tiles do not contribute junk to chksum

       if( .NOT.module_is_initialized )call mpp_error( FATAL, 'MPP_READ_COMPRESSED_3D_: must first call mpp_io_init.' )
       if( .NOT.mpp_file(unit)%valid )call mpp_error( FATAL, 'MPP_READ_COMPRESSED_3D_: invalid unit number.' )

       print_compressed_chksum = .FALSE.
       threading_flag = MPP_SINGLE
       if( PRESENT(threading) )threading_flag = threading
       if( threading_flag == MPP_MULTI ) then
      call read_record(unit,field,size(data(:,:,:)),data,tindex,start_in=start, axsiz_in=nread)
       else if( threading_flag == MPP_SINGLE ) then

      io_domain=>mpp_get_io_domain(domain)
      if(.not. ASSOCIATED(io_domain)) call mpp_error( FATAL, 'MPP_READ_COMPRESSED_3D_: io_domain must be defined.' )
      npes = mpp_get_domain_npes(io_domain)
      allocate(pelist(npes))
      call mpp_get_pelist(io_domain,pelist)

      if(mpp_pe() == pelist(1)) call read_record(unit,field,size(data(:,:,:)),data,tindex,start_in=start, axsiz_in=nread)

      !--- z1l replace mpp_broadcast with mpp_send/mpp_recv to avoid hang in calling MPI_COMM_CREATE
      !---     because size(pelist) might be different for different rank.
      !--- prepost receive
      if( mpp_pe() == pelist(1) ) then
         do p = 2, npes
            call mpp_send(data(1,1,1), plen=size(data(:,:,:)), to_pe=pelist(p), tag=COMM_TAG_1)
         enddo
         call mpp_sync_self()
      else
         call mpp_recv(data(1,1,1), glen=size(data(:,:,:)), from_pe=pelist(1), block=.false., tag=COMM_TAG_1)
         call mpp_sync_self(check=EVENT_RECV)
      endif

      deallocate(pelist)
       else
      call mpp_error( FATAL, 'MPP_READ_COMPRESSED_3D_: threading should be MPP_SINGLE or MPP_MULTI')
       endif

       compute_chksum = .FALSE.
       if (ANY(field%checksum /= default_field%checksum) ) compute_chksum = .TRUE.

       if (compute_chksum) then
 #ifdef use_netCDF
      if (field%type==NF_INT) then
         if (field%fill == MPP_FILL_DOUBLE .or. field%fill == real(MPP_FILL_INT) ) then
                chk = mpp_chksum( ceiling(data), mask_val=MPP_FILL_INT )
             else
            call mpp_error(NOTE,"During mpp_io(mpp_read_compressed_3d) int field "//trim(field%name)// &
                   " found fill. Icebergs, or code using defaults can safely ignore. "// &
                   " If manually overriding compressed restart fills, confirm this is what you want.")
            chk = mpp_chksum( ceiling(data), mask_val=field%fill)
         end if
      else !!real
         chk = mpp_chksum(data,mask_val=field%fill)
      end if
 #endif
      !!compare
          if ( print_compressed_chksum) then
             if ( mpp_pe() == mpp_root_pe() ) then
                print '(A,Z16)', "mpp_read_compressed_3d chksum: "//trim(field%name)//" = ", chk
                !! discuss making fatal after testing/review to match other routines.
                !! Need to do some nword-counting and digging with pjp
                !! this should be if ( chk /= field%checksum ) as it was tested @ulm_201505..
                if ( MOD(chk, field%checksum(1)) /= 0 ) then
                   print '(A,Z16)', "File stored checksum: "//trim(field%name)//" = ", field%checksum(1)
                   call mpp_error(NOTE,"mpp_read_compressed_3d chksum: "//trim(field%name)//" failed!")
                end if
             endif
          end if
       end if

       call mpp_clock_end(mpp_read_clock)
       return
     end subroutine MPP_READ_COMPRESSED_3D_
will
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! MPP_TRANSMIT !! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine MPP_TRANSMIT_(put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request)!a message-passing routine intended to be reminiscent equally of both MPI and SHMEM!put_data and get_data are contiguous MPP_TYPE_ arrays!at each call, your put_data array is put to to_pe 's get_data! your get_data array is got from from_pe 's put_data!i.e we assume that typically(e.g updating halo regions) each PE performs a put _and_ a get!special PE designations:! NULL_PE:to disable a put or a get(e.g at boundaries)! ANY_PE:if remote PE for the put or get is to be unspecific! ALL_PES:broadcast and collect operations(collect not yet implemented)!ideally we would not pass length, but this f77-style call performs better(arrays passed by address, not descriptor)!further, this permits< length > contiguous words from an array of any rank to be passed(avoiding f90 rank conformance check)!caller is responsible for completion checks(mpp_sync_self) before and after integer, intent(in) ::put_len, to_pe, get_len, from_pe MPP_TYPE_, intent(in) ::put_data(*) MPP_TYPE_, intent(out) ::get_data(*) logical, intent(in), optional ::block integer, intent(in), optional ::tag integer, intent(out), optional ::recv_request, send_request logical ::block_comm integer ::i MPP_TYPE_, allocatable, save ::local_data(:) !local copy used by non-parallel code(no SHMEM or MPI) integer ::comm_tag integer ::rsize if(.NOT.module_is_initialized) call mpp_error(FATAL, 'MPP_TRANSMIT:You must first call mpp_init.') if(to_pe.EQ.NULL_PE .AND. from_pe.EQ.NULL_PE) return block_comm=.true. if(PRESENT(block)) block_comm=block if(debug) then call SYSTEM_CLOCK(tick) write(stdout_unit,'(a, i18, a, i6, a, 2i6, 2i8)')&'T=', tick, ' PE=', pe, ' MPP_TRANSMIT begin:to_pe, from_pe, put_len, get_len=', to_pe, from_pe, put_len, get_len end if comm_tag=DEFAULT_TAG if(present(tag)) comm_tag=tag!do put first and then get if(to_pe.GE.0 .AND. to_pe.LT.npes) then!use non-blocking sends if(debug .and.(current_clock.NE.0)) call SYSTEM_CLOCK(start_tick)!z1l:truly non-blocking send.! if(request(to_pe).NE.MPI_REQUEST_NULL) then !only one message from pe-> to_pe in queue *PE waiting for to_pe ! call error else get_len so only do gets but you cannot have a pure get with MPI call a get means do a wait to ensure put on remote PE is complete error call increase mpp_nml request_multiply call MPP_TRANSMIT get_len end if return end subroutine MPP_TRANSMIT_ ! MPP_BROADCAST ! subroutine but that doesn t allow !broadcast to a subset of PEs This version will
Definition: mpp_transmit_mpi.h:166

time_interp_external_mod::field
type(ext_fieldtype), dimension(:), pointer, save, private field
Definition: time_interp_external.F90:137

integer
*f90 *************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine MPP_UPDATE_NEST_FINE_2D_(field, nest_domain, wbuffer, ebuffer, sbuffer, nbuffer, &flags, complete, position, extra_halo, name, tile_count) MPP_TYPE_, intent(in) ::field(:,:) type(nest_domain_type), intent(inout) ::nest_domain MPP_TYPE_, intent(inout) ::wbuffer(:,:) MPP_TYPE_, intent(inout) ::ebuffer(:,:) MPP_TYPE_, intent(inout) ::sbuffer(:,:) MPP_TYPE_, intent(inout) ::nbuffer(:,:) integer, intent(in), optional ::flags logical, intent(in), optional ::complete integer, intent(in), optional ::position integer, intent(in), optional ::extra_halo character(len= *), intent(in), optional ::name integer, intent(in), optional ::tile_count MPP_TYPE_ ::field3D(size(field, 1), size(field, 2), 1) MPP_TYPE_ ::wbuffer3D(size(wbuffer, 1), size(wbuffer, 2), 1) MPP_TYPE_ ::ebuffer3D(size(ebuffer, 1), size(ebuffer, 2), 1) MPP_TYPE_ ::sbuffer3D(size(sbuffer, 1), size(sbuffer, 2), 1) MPP_TYPE_ ::nbuffer3D(size(nbuffer, 1), size(nbuffer, 2), 1) pointer(ptr, field3D) pointer(ptr_w, wbuffer3D) pointer(ptr_e, ebuffer3D) pointer(ptr_s, sbuffer3D) pointer(ptr_n, nbuffer3D) ptr=LOC(field) ptr_w=LOC(wbuffer) ptr_e=LOC(ebuffer) ptr_s=LOC(sbuffer) ptr_n=LOC(nbuffer) call mpp_update_nest_fine(field3D, nest_domain, wbuffer3D, ebuffer3D, sbuffer3D, nbuffer3D, &flags, complete, position, extra_halo, name, tile_count) returnend subroutine MPP_UPDATE_NEST_FINE_2D_subroutine MPP_UPDATE_NEST_FINE_3D_(field, nest_domain, wbuffer, sbuffer, ebuffer, nbuffer, &flags, complete, position, extra_halo, name, tile_count) MPP_TYPE_, intent(in) ::field(:,:,:) type(nest_domain_type), intent(inout) ::nest_domain MPP_TYPE_, intent(inout) ::wbuffer(:,:,:) MPP_TYPE_, intent(inout) ::ebuffer(:,:,:) MPP_TYPE_, intent(inout) ::sbuffer(:,:,:) MPP_TYPE_, intent(inout) ::nbuffer(:,:,:) integer, intent(in), optional ::flags logical, intent(in), optional ::complete integer, intent(in), optional ::position integer, intent(in), optional ::extra_halo character(len= *), intent(in), optional ::name integer, intent(in), optional ::tile_count MPP_TYPE_ ::d_type type(nestSpec), pointer ::update=> set_mismatch integer ::tile update_position nbuffersz l_size integer
Definition: mpp_update_nest_domains.h:79

unit
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine READ_RECORD_CORE_(unit, field, nwords, data, start, axsiz) integer, intent(in) ::unit type(fieldtype), intent(in) ::field integer, intent(in) ::nwords MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in) ::start(:), axsiz(:) integer(SHORT_KIND) ::i2vals(nwords)!rab used in conjunction with transfer intrinsic to determine size of a variable integer(KIND=1) ::one_byte(8) integer ::word_sz!#ifdef __sgi integer(INT_KIND) ::ivals(nwords) real(FLOAT_KIND) ::rvals(nwords)!#else! integer ::ivals(nwords)! real ::rvals(nwords)!#endif real(DOUBLE_KIND) ::r8vals(nwords) pointer(ptr1, i2vals) pointer(ptr2, ivals) pointer(ptr3, rvals) pointer(ptr4, r8vals) if(mpp_io_stack_size< nwords) call mpp_io_set_stack_size(nwords) call mpp_error(FATAL, 'MPP_READ currently requires use_netCDF option') end subroutine READ_RECORD_CORE_ subroutine READ_RECORD_(unit, field, nwords, data, time_level, domain, position, tile_count, start_in, axsiz_in)!routine that is finally called by all mpp_read routines to perform the read!a non-netCDF record contains:! field ID! a set of 4 coordinates(is:ie, js:je) giving the data subdomain! a timelevel and a timestamp(=NULLTIME if field is static)! 3D real data(stored as 1D)!if you are using direct access I/O, the RECL argument to OPEN must be large enough for the above!in a global direct access file, record position on PE is given by %record.!Treatment of timestamp:! We assume that static fields have been passed without a timestamp.! Here that is converted into a timestamp of NULLTIME.! For non-netCDF fields, field is treated no differently, but is written! with a timestamp of NULLTIME. There is no check in the code to prevent! the user from repeatedly writing a static field. integer, intent(in) ::unit, nwords type(fieldtype), intent(in) ::field MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in), optional ::time_level type(domain2D), intent(in), optional ::domain integer, intent(in), optional ::position, tile_count integer, intent(in), optional ::start_in(:), axsiz_in(:) integer, dimension(size(field%axes(:))) ::start, axsiz integer ::tlevel !, subdomain(4) integer ::i, error, is, ie, js, je, isg, ieg, jsg, jeg type(domain2d), pointer ::io_domain=> unit
Definition: mpp_read_2Ddecomp.h:167

crtm_aerosol_define::read_record
integer function read_record(fid, aerosol)
Definition: CRTM_Aerosol_Define.f90:1445

allocatable
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine MPP_WRITE_UNLIMITED_AXIS_1D_(unit, field, domain, data, nelems_io) integer, intent(in) ::unit type(fieldtype), intent(inout) ::field type(domain2D), intent(inout) ::domain MPP_TYPE_, intent(inout) ::data(:) integer, intent(in) ::nelems_io(:) ! number of compressed elements from each ! member of the io_domain. It MUST have the ! same order as the io_domain pelist. integer, allocatable ::pelist(:) integer ::i, j, nelems, npes type(domain2d), pointer ::io_domain=> allocatable
Definition: mpp_write_unlimited_axis.h:30

npes
int npes
Definition: threadloc.c:26

fv3jedi_increment_mod::copy
subroutine, public copy(self, rhs)
Definition: fv3jedi_increment_mod.f90:254

end
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! MPP_TRANSMIT !! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine MPP_TRANSMIT_(put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request)!a message-passing routine intended to be reminiscent equally of both MPI and SHMEM!put_data and get_data are contiguous MPP_TYPE_ arrays!at each call, your put_data array is put to to_pe 's get_data! your get_data array is got from from_pe 's put_data!i.e we assume that typically(e.g updating halo regions) each PE performs a put _and_ a get!special PE designations:! NULL_PE:to disable a put or a get(e.g at boundaries)! ANY_PE:if remote PE for the put or get is to be unspecific! ALL_PES:broadcast and collect operations(collect not yet implemented)!ideally we would not pass length, but this f77-style call performs better(arrays passed by address, not descriptor)!further, this permits< length > contiguous words from an array of any rank to be passed(avoiding f90 rank conformance check)!caller is responsible for completion checks(mpp_sync_self) before and after integer, intent(in) ::put_len, to_pe, get_len, from_pe MPP_TYPE_, intent(in) ::put_data(*) MPP_TYPE_, intent(out) ::get_data(*) logical, intent(in), optional ::block integer, intent(in), optional ::tag integer, intent(out), optional ::recv_request, send_request logical ::block_comm integer ::i MPP_TYPE_, allocatable, save ::local_data(:) !local copy used by non-parallel code(no SHMEM or MPI) integer ::comm_tag integer ::rsize if(.NOT.module_is_initialized) call mpp_error(FATAL, 'MPP_TRANSMIT:You must first call mpp_init.') if(to_pe.EQ.NULL_PE .AND. from_pe.EQ.NULL_PE) return block_comm=.true. if(PRESENT(block)) block_comm=block if(debug) then call SYSTEM_CLOCK(tick) write(stdout_unit,'(a, i18, a, i6, a, 2i6, 2i8)')&'T=', tick, ' PE=', pe, ' MPP_TRANSMIT begin:to_pe, from_pe, put_len, get_len=', to_pe, from_pe, put_len, get_len end if comm_tag=DEFAULT_TAG if(present(tag)) comm_tag=tag!do put first and then get if(to_pe.GE.0 .AND. to_pe.LT.npes) then!use non-blocking sends if(debug .and.(current_clock.NE.0)) call SYSTEM_CLOCK(start_tick)!z1l:truly non-blocking send.! if(request(to_pe).NE.MPI_REQUEST_NULL) then !only one message from pe-> to_pe in queue *PE waiting for to_pe ! call error else get_len so only do gets but you cannot have a pure get with MPI call a get means do a wait to ensure put on remote PE is complete error call increase mpp_nml request_multiply call MPP_TRANSMIT end
Definition: mpp_transmit_mpi.h:153

make_check_data.out
out
Definition: make_check_data.py:458

NULL
*f90 *************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************! this routine is used to retrieve scalar boundary data for symmetric domain. subroutine MPP_GET_BOUNDARY_2D_(field, domain, ebuffer, sbuffer, wbuffer, nbuffer, flags, &position, complete, tile_count) type(domain2D), intent(in) ::domain MPP_TYPE_, intent(in) ::field(:,:) MPP_TYPE_, intent(inout), optional ::ebuffer(:), sbuffer(:), wbuffer(:), nbuffer(:) integer, intent(in), optional ::flags, position, tile_count logical, intent(in), optional ::complete MPP_TYPE_ ::field3D(size(field, 1), size(field, 2), 1) MPP_TYPE_, allocatable, dimension(:,:) ::ebuffer2D, sbuffer2D, wbuffer2D, nbuffer2D integer ::xcount, ycount integer ::ntile logical ::need_ebuffer, need_sbuffer, need_wbuffer, need_nbuffer integer(LONG_KIND), dimension(MAX_DOMAIN_FIELDS, MAX_TILES), save ::f_addrs=-9999 integer(LONG_KIND), dimension(4, MAX_DOMAIN_FIELDS, MAX_TILES), save ::b_addrs=-9999 integer, save ::bsize(4)=0, isize=0, jsize=0, ksize=0, pos, list=0, l_size=0, upflags integer ::buffer_size(4) integer ::max_ntile, tile, update_position, ishift, jshift logical ::do_update, is_complete, set_mismatch character(len=3) ::text MPP_TYPE_ ::d_type type(overlapSpec), pointer ::bound=> NULL() ntile
Definition: mpp_get_boundary.h:45

gsw_mod_check_data::p
real(r8), dimension(cast_m, cast_n) p
Definition: gsw_mod_check_data.f90:247

binary_file_utility::false
integer(long), parameter false
Definition: Binary_File_Utility.f90:60

from_pe
from from_pe
Definition: mpp_do_redistribute.h:93

MPP_TYPE_
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! MPP_TRANSMIT !! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine MPP_TRANSMIT_(put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request)!a message-passing routine intended to be reminiscent equally of both MPI and SHMEM!put_data and get_data are contiguous MPP_TYPE_ arrays!at each call, your put_data array is put to to_pe 's get_data! your get_data array is got from from_pe 's put_data!i.e we assume that typically(e.g updating halo regions) each PE performs a put _and_ a get!special PE designations:! NULL_PE:to disable a put or a get(e.g at boundaries)! ANY_PE:if remote PE for the put or get is to be unspecific! ALL_PES:broadcast and collect operations(collect not yet implemented)!ideally we would not pass length, but this f77-style call performs better(arrays passed by address, not descriptor)!further, this permits< length > contiguous words from an array of any rank to be passed(avoiding f90 rank conformance check)!caller is responsible for completion checks(mpp_sync_self) before and after integer, intent(in) ::put_len, to_pe, get_len, from_pe MPP_TYPE_, intent(in) ::put_data(*) MPP_TYPE_, intent(out) ::get_data(*) logical, intent(in), optional ::block integer, intent(in), optional ::tag integer, intent(out), optional ::recv_request, send_request logical ::block_comm integer ::i MPP_TYPE_, allocatable, save ::local_data(:) !local copy used by non-parallel code(no SHMEM or MPI) integer ::comm_tag integer ::rsize if(.NOT.module_is_initialized) call mpp_error(FATAL, 'MPP_TRANSMIT:You must first call mpp_init.') if(to_pe.EQ.NULL_PE .AND. from_pe.EQ.NULL_PE) return block_comm=.true. if(PRESENT(block)) block_comm=block if(debug) then call SYSTEM_CLOCK(tick) write(stdout_unit,'(a, i18, a, i6, a, 2i6, 2i8)')&'T=', tick, ' PE=', pe, ' MPP_TRANSMIT begin:to_pe, from_pe, put_len, get_len=', to_pe, from_pe, put_len, get_len end if comm_tag=DEFAULT_TAG if(present(tag)) comm_tag=tag!do put first and then get if(to_pe.GE.0 .AND. to_pe.LT.npes) then!use non-blocking sends if(debug .and.(current_clock.NE.0)) call SYSTEM_CLOCK(start_tick)!z1l:truly non-blocking send.! if(request(to_pe).NE.MPI_REQUEST_NULL) then !only one message from pe-> to_pe in queue *PE waiting for to_pe ! call error else get_len so only do gets but you cannot have a pure get with MPI call a get means do a wait to ensure put on remote PE is complete error call increase mpp_nml request_multiply call MPP_TRANSMIT get_len end if return end subroutine MPP_TRANSMIT_ ! MPP_BROADCAST ! subroutine but that doesn t allow !broadcast to a subset of PEs This version and mpp_transmit will remain !backward compatible MPP_TYPE_
Definition: mpp_transmit_mpi.h:166

if
l_size ! loop over number of fields ke do je do ie to je n if(.NOT. d_comm%R_do_buf(list)) cycle from_pe

amip_interp_mod::module_is_initialized
logical module_is_initialized
Definition: amip_interp.F90:272

to_pe
l_size ! loop over number of fields ke do je do ie to to_pe
Definition: mpp_do_redistribute.h:72

diag_integral_mod::version
character(len=128) version
Definition: diag_integral.F90:121

accoeff_define::zero
real(double), parameter zero
Definition: ACCoeff_Define.f90:68

is
l_size ! loop over number of fields ke do je do ie to is
Definition: mpp_do_redistribute.h:72

c2f.type
type
Definition: c2f.py:15

mpp_file
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine READ_RECORD_CORE_(unit, field, nwords, data, start, axsiz) integer, intent(in) ::unit type(fieldtype), intent(in) ::field integer, intent(in) ::nwords MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in) ::start(:), axsiz(:) integer(SHORT_KIND) ::i2vals(nwords)!rab used in conjunction with transfer intrinsic to determine size of a variable integer(KIND=1) ::one_byte(8) integer ::word_sz!#ifdef __sgi integer(INT_KIND) ::ivals(nwords) real(FLOAT_KIND) ::rvals(nwords)!#else! integer ::ivals(nwords)! real ::rvals(nwords)!#endif real(DOUBLE_KIND) ::r8vals(nwords) pointer(ptr1, i2vals) pointer(ptr2, ivals) pointer(ptr3, rvals) pointer(ptr4, r8vals) if(mpp_io_stack_size< nwords) call mpp_io_set_stack_size(nwords) call mpp_error(FATAL, 'MPP_READ currently requires use_netCDF option') end subroutine READ_RECORD_CORE_ subroutine READ_RECORD_(unit, field, nwords, data, time_level, domain, position, tile_count, start_in, axsiz_in)!routine that is finally called by all mpp_read routines to perform the read!a non-netCDF record contains:! field ID! a set of 4 coordinates(is:ie, js:je) giving the data subdomain! a timelevel and a timestamp(=NULLTIME if field is static)! 3D real data(stored as 1D)!if you are using direct access I/O, the RECL argument to OPEN must be large enough for the above!in a global direct access file, record position on PE is given by %record.!Treatment of timestamp:! We assume that static fields have been passed without a timestamp.! Here that is converted into a timestamp of NULLTIME.! For non-netCDF fields, field is treated no differently, but is written! with a timestamp of NULLTIME. There is no check in the code to prevent! the user from repeatedly writing a static field. integer, intent(in) ::unit, nwords type(fieldtype), intent(in) ::field MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in), optional ::time_level type(domain2D), intent(in), optional ::domain integer, intent(in), optional ::position, tile_count integer, intent(in), optional ::start_in(:), axsiz_in(:) integer, dimension(size(field%axes(:))) ::start, axsiz integer ::tlevel !, subdomain(4) integer ::i, error, is, ie, js, je, isg, ieg, jsg, jeg type(domain2d), pointer ::io_domain=> mpp_file(unit)%id

start
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine READ_RECORD_CORE_(unit, field, nwords, data, start, axsiz) integer, intent(in) ::unit type(fieldtype), intent(in) ::field integer, intent(in) ::nwords MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in) ::start(:), axsiz(:) integer(SHORT_KIND) ::i2vals(nwords)!rab used in conjunction with transfer intrinsic to determine size of a variable integer(KIND=1) ::one_byte(8) integer ::word_sz!#ifdef __sgi integer(INT_KIND) ::ivals(nwords) real(FLOAT_KIND) ::rvals(nwords)!#else! integer ::ivals(nwords)! real ::rvals(nwords)!#endif real(DOUBLE_KIND) ::r8vals(nwords) pointer(ptr1, i2vals) pointer(ptr2, ivals) pointer(ptr3, rvals) pointer(ptr4, r8vals) if(mpp_io_stack_size< nwords) call mpp_io_set_stack_size(nwords) call mpp_error(FATAL, 'MPP_READ currently requires use_netCDF option') end subroutine READ_RECORD_CORE_ subroutine READ_RECORD_(unit, field, nwords, data, time_level, domain, position, tile_count, start_in, axsiz_in)!routine that is finally called by all mpp_read routines to perform the read!a non-netCDF record contains:! field ID! a set of 4 coordinates(is:ie, js:je) giving the data subdomain! a timelevel and a timestamp(=NULLTIME if field is static)! 3D real data(stored as 1D)!if you are using direct access I/O, the RECL argument to OPEN must be large enough for the above!in a global direct access file, record position on PE is given by %record.!Treatment of timestamp:! We assume that static fields have been passed without a timestamp.! Here that is converted into a timestamp of NULLTIME.! For non-netCDF fields, field is treated no differently, but is written! with a timestamp of NULLTIME. There is no check in the code to prevent! the user from repeatedly writing a static field. integer, intent(in) ::unit, nwords type(fieldtype), intent(in) ::field MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in), optional ::time_level type(domain2D), intent(in), optional ::domain integer, intent(in), optional ::position, tile_count integer, intent(in), optional ::start_in(:), axsiz_in(:) integer, dimension(size(field%axes(:))) ::start, axsiz integer ::tlevel !, subdomain(4) integer ::i, error, is, ie, js, je, isg, ieg, jsg, jeg type(domain2d), pointer ::io_domain=> tlevel if(PRESENT(start_in) .AND. PRESENT(axsiz_in)) then if(size(start(! the data domain and compute domain must refer to the subdomain being passed ! In this ! since that attempts to gather all data on PE start
Definition: mpp_read_2Ddecomp.h:197

mpp_error
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! MPP_TRANSMIT !! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine MPP_TRANSMIT_(put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request)!a message-passing routine intended to be reminiscent equally of both MPI and SHMEM!put_data and get_data are contiguous MPP_TYPE_ arrays!at each call, your put_data array is put to to_pe 's get_data! your get_data array is got from from_pe 's put_data!i.e we assume that typically(e.g updating halo regions) each PE performs a put _and_ a get!special PE designations:! NULL_PE:to disable a put or a get(e.g at boundaries)! ANY_PE:if remote PE for the put or get is to be unspecific! ALL_PES:broadcast and collect operations(collect not yet implemented)!ideally we would not pass length, but this f77-style call performs better(arrays passed by address, not descriptor)!further, this permits< length > contiguous words from an array of any rank to be passed(avoiding f90 rank conformance check)!caller is responsible for completion checks(mpp_sync_self) before and after integer, intent(in) ::put_len, to_pe, get_len, from_pe MPP_TYPE_, intent(in) ::put_data(*) MPP_TYPE_, intent(out) ::get_data(*) logical, intent(in), optional ::block integer, intent(in), optional ::tag integer, intent(out), optional ::recv_request, send_request logical ::block_comm integer ::i MPP_TYPE_, allocatable, save ::local_data(:) !local copy used by non-parallel code(no SHMEM or MPI) integer ::comm_tag integer ::rsize if(.NOT.module_is_initialized) call mpp_error(FATAL, 'MPP_TRANSMIT:You must first call mpp_init.') if(to_pe.EQ.NULL_PE .AND. from_pe.EQ.NULL_PE) return block_comm=.true. if(PRESENT(block)) block_comm=block if(debug) then call SYSTEM_CLOCK(tick) write(stdout_unit,'(a, i18, a, i6, a, 2i6, 2i8)')&'T=', tick, ' PE=', pe, ' MPP_TRANSMIT begin:to_pe, from_pe, put_len, get_len=', to_pe, from_pe, put_len, get_len end if comm_tag=DEFAULT_TAG if(present(tag)) comm_tag=tag!do put first and then get if(to_pe.GE.0 .AND. to_pe.LT.npes) then!use non-blocking sends if(debug .and.(current_clock.NE.0)) call SYSTEM_CLOCK(start_tick)!z1l:truly non-blocking send.! if(request(to_pe).NE.MPI_REQUEST_NULL) then !only one message from pe-> to_pe in queue *PE waiting for to_pe ! call error else get_len so only do gets but you cannot have a pure get with MPI call mpp_error(FATAL, 'MPP_TRANSMIT:you cannot transmit to ANY_PE using MPI.') else if(to_pe.NE.NULL_PE) then !no other valid cases except NULL_PE call mpp_error(FATAL

mpp_io_mod::mpp_read_clock
integer mpp_read_clock
Definition: mpp_io.F90:1054

fv_control_nlm_mod::fill
logical, pointer fill
Definition: fv_control_nlm.F90:170

type_distribution::received
logical function received(this, seqno)
Definition: m_distribution.f90:72

fv3jedi_increment_mod::check
subroutine check(self)
Definition: fv3jedi_increment_mod.f90:1932

LONG_KIND
#define LONG_KIND

size
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************subroutine READ_RECORD_CORE_(unit, field, nwords, data, start, axsiz) integer, intent(in) ::unit type(fieldtype), intent(in) ::field integer, intent(in) ::nwords MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in) ::start(:), axsiz(:) integer(SHORT_KIND) ::i2vals(nwords)!rab used in conjunction with transfer intrinsic to determine size of a variable integer(KIND=1) ::one_byte(8) integer ::word_sz!#ifdef __sgi integer(INT_KIND) ::ivals(nwords) real(FLOAT_KIND) ::rvals(nwords)!#else! integer ::ivals(nwords)! real ::rvals(nwords)!#endif real(DOUBLE_KIND) ::r8vals(nwords) pointer(ptr1, i2vals) pointer(ptr2, ivals) pointer(ptr3, rvals) pointer(ptr4, r8vals) if(mpp_io_stack_size< nwords) call mpp_io_set_stack_size(nwords) call mpp_error(FATAL, 'MPP_READ currently requires use_netCDF option') end subroutine READ_RECORD_CORE_ subroutine READ_RECORD_(unit, field, nwords, data, time_level, domain, position, tile_count, start_in, axsiz_in)!routine that is finally called by all mpp_read routines to perform the read!a non-netCDF record contains:! field ID! a set of 4 coordinates(is:ie, js:je) giving the data subdomain! a timelevel and a timestamp(=NULLTIME if field is static)! 3D real data(stored as 1D)!if you are using direct access I/O, the RECL argument to OPEN must be large enough for the above!in a global direct access file, record position on PE is given by %record.!Treatment of timestamp:! We assume that static fields have been passed without a timestamp.! Here that is converted into a timestamp of NULLTIME.! For non-netCDF fields, field is treated no differently, but is written! with a timestamp of NULLTIME. There is no check in the code to prevent! the user from repeatedly writing a static field. integer, intent(in) ::unit, nwords type(fieldtype), intent(in) ::field MPP_TYPE_, intent(inout) ::data(nwords) integer, intent(in), optional ::time_level type(domain2D), intent(in), optional ::domain integer, intent(in), optional ::position, tile_count integer, intent(in), optional ::start_in(:), axsiz_in(:) integer, dimension(size(field%axes(:))) ::start, axsiz integer ::tlevel !, subdomain(4) integer ::i, error, is, ie, js, je, isg, ieg, jsg, jeg type(domain2d), pointer ::io_domain=> tlevel if(PRESENT(start_in) .AND. PRESENT(axsiz_in)) then if(size(start(! the data domain and compute domain must refer to the subdomain being passed ! In this ! since that attempts to gather all data on PE size(field%axes(:)) axsiz(i)

a
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If see< http:! ***********************************************************************!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! MPP_TRANSMIT !! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine MPP_TRANSMIT_(put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request)!a message-passing routine intended to be reminiscent equally of both MPI and SHMEM!put_data and get_data are contiguous MPP_TYPE_ arrays!at each call, your put_data array is put to to_pe 's get_data! your get_data array is got from from_pe 's put_data!i.e we assume that typically(e.g updating halo regions) each PE performs a put _and_ a get!special PE designations:! NULL_PE:to disable a put or a get(e.g at boundaries)! ANY_PE:if remote PE for the put or get is to be unspecific! ALL_PES:broadcast and collect operations(collect not yet implemented)!ideally we would not pass length, but this f77-style call performs better(arrays passed by address, not descriptor)!further, this permits< length > contiguous words from an array of any rank to be passed(avoiding f90 rank conformance check)!caller is responsible for completion checks(mpp_sync_self) before and after integer, intent(in) ::put_len, to_pe, get_len, from_pe MPP_TYPE_, intent(in) ::put_data(*) MPP_TYPE_, intent(out) ::get_data(*) logical, intent(in), optional ::block integer, intent(in), optional ::tag integer, intent(out), optional ::recv_request, send_request logical ::block_comm integer ::i MPP_TYPE_, allocatable, save ::local_data(:) !local copy used by non-parallel code(no SHMEM or MPI) integer ::comm_tag integer ::rsize if(.NOT.module_is_initialized) call mpp_error(FATAL, 'MPP_TRANSMIT:You must first call mpp_init.') if(to_pe.EQ.NULL_PE .AND. from_pe.EQ.NULL_PE) return block_comm=.true. if(PRESENT(block)) block_comm=block if(debug) then call SYSTEM_CLOCK(tick) write(stdout_unit,'(a, i18, a, i6, a, 2i6, 2i8)')&'T=', tick, ' PE=', pe, ' MPP_TRANSMIT begin:to_pe, from_pe, put_len, get_len=', to_pe, from_pe, put_len, get_len end if comm_tag=DEFAULT_TAG if(present(tag)) comm_tag=tag!do put first and then get if(to_pe.GE.0 .AND. to_pe.LT.npes) then!use non-blocking sends if(debug .and.(current_clock.NE.0)) call SYSTEM_CLOCK(start_tick)!z1l:truly non-blocking send.! if(request(to_pe).NE.MPI_REQUEST_NULL) then !only one message from pe-> to_pe in queue *PE waiting for to_pe ! call error else get_len so only do gets but you cannot have a pure get with MPI call a get means do a wait to ensure put on remote PE is complete error call increase mpp_nml request_multiply call MPP_TRANSMIT get_len end if return end subroutine MPP_TRANSMIT_ ! MPP_BROADCAST ! subroutine but that doesn t allow !broadcast to a subset of PEs This version and mpp_transmit will remain !backward compatible intent(inout) a
Definition: mpp_transmit_mpi.h:178

mpp_parameter_mod::fatal
integer, parameter, public fatal
Definition: mpp_parameter.F90:68

station_data_mod::pelist
integer, dimension(:), allocatable pelist
Definition: station_data.F90:293

not
************************************************************************GNU Lesser General Public License **This file is part of the GFDL Flexible Modeling System(FMS). ! *! *FMS is free software without even the implied warranty of MERCHANTABILITY or *FITNESS FOR A PARTICULAR PURPOSE See the GNU General Public License *for more details **You should have received a copy of the GNU Lesser General Public *License along with FMS If not
Definition: mpp_read_compressed.h:4

xgrid_mod::some
subroutine, public some(xmap, some_arr, grid_id)
Definition: xgrid.F90:3421

mpp_io_mod::default_field
type(fieldtype), save, public default_field
Definition: mpp_io.F90:1072